Reproduce file:

- [box/access.test.lua, null]
- [box/iterator.test.lua, null]
- [box/bitset.test.lua, null]

The issue happens, because box/bitset.lua:dump() uses iterate(), which
gets cleared by box/iterator test. Fix this by using utils.iterate()
instead.

index.update() looks up the old tuple in the primary index, applies
update operations to it, then writes a DELETE statement to secondary
indexes to delete the old tuple and a REPLACE statement to all indexes
to insert the new tuple. It also sets a column mask for both DELETE and
REPLACE statements. The column mask is a bit mask which has a bit set if
the corresponding field is updated by update operations. It is used by
the write iterator for two purposes. First, the write iterator skips
REPLACE statements that don't update key fields. Second, the write
iterator turns a REPLACE that has a column mask that intersects with key
fields into an INSERT (so that it can get annihilated with a DELETE when
the time comes). The latter is correct, because if an update() does
update secondary key fields, then it must have deleted the old tuple and
hence the new tuple is unique in terms of extended key (merged primary
and secondary key parts, i.e. cmp_def).

The problem is that a bit may be set in a column mask even if the
corresponding field does not actually get updated. For example, consider
the following example.

  s = box.schema.space.create('test', {engine = 'vinyl'})
  s:create_index('pk')
  s:create_index('sk', {parts = {2, 'unsigned'}})
  s:insert{1, 10}
  box.snapshot()
  s:update(1, {{'=', 2, 10}})

The update() doesn't modify the secondary key field so it only writes
REPLACE{1, 10} to the secondary index (actually it writes DELETE{1, 10}
too, but it gets overwritten by the REPLACE). However, the REPLACE has
column mask that says that update() does modify the key field, because a
column mask is generated solely from update operations, before applying
them. As a result, the write iterator will not skip this REPLACE on
dump. This won't have any serious consequences, because this is a mere
optimization. What is worse, the write iterator will also turn the
REPLACE into an INSERT, which is absolutely wrong as the REPLACE is
preceded by INSERT{1, 10}. If the tuple gets deleted, the DELETE
statement and the INSERT created by the write iterator from the REPLACE
will get annihilated, leaving the old INSERT{1, 10} visible.

The issue may result in invalid select() output as demonstrated in the
issue description. It may also result in crashes, because the tuple
cache is very sensible to invalid select() output.

To fix this issue let's clear key bits in the column mask if we detect
that an update() doesn't actually update secondary key fields although
the column mask says it does.

Closes #3607

In some cases operation box.snapshot() takes longer than expected.
This leads to situations when the previous error is reported instead
of the new one. Now these errors completely separated.

Closes #3599

Added server option to syslog configuration.
Server option is responsible for log destination. At the momemt
there is two ways of usage:server=unix:/path/to/socket or
server=ipv4:port. If port is not set default udp port 514 is used.
If logging to syslog is set, however there is no server options -
default location is used: Linux /dev/log and Mac /var/run/syslog.

Closes #3487

Print reproduce file.

The -j -1 used to legacy consistent mode. Reducing the number of jobs
to one by switching to -j 1, uses same part of the code as in parallel
mode. The code in parallel mode kills hung tests.

Part of https://github.com/tarantool/test-run/issues/106

It is dangerous to call box.cfg() concurrently from different fibers.
For example, replication configuration uses static variables and yields
so calling it concurrently can result in a crash. To make sure it never
happens, let's protect box.cfg() with a lock.

Closes #3606

Fixes #3489.

* support expected fail of non-default server
* fix format_process function: prevent crash on some machines (#92)
* print whole reject file when a test failed (#102)

There is a different error message while gitlab ci running

Fixes #3602

No more `include/yaml.h` and `lib/libyaml_static.a` installs.

closes gh-3547

Add txn_is_first_statement() function, which returns true if this is the
first statement of the transaction. The function is supposed to be used
from on_replace trigger to detect transaction boundaries.

Needed for #2129

vy_task::status stores the return code of the ->execute method. There
are only two codes in use: 0 - success and -1 - failure. So let's chage
this to a boolean flag.

This flag is set iff worker_pool != NULL hence it is pointless.

We need cbus for forwarding deferred DELETE statements generated in a
worker thread during primary index compaction to the tx thread where
they can be inserted into secondary indexes. Since pthread mutex/cond
and cbus are incompatible by their nature, let's rework communication
channel between the tx and worker threads using cbus.

Needed for #2129

I'm planning to add some new members and remove some old members from
those structs. For this to play nicely, let's do some renames:

  vy_scheduler::workers_available => idle_worker_count
  vy_scheduler::input_queue       => pending_tasks
  vy_scheduler::output_queue      => processed_tasks
  vy_task::link                   => in_pending, in_processed

Currently, we don't really need it, but once we switch communication
channel between the scheduler and workers from pthread mutex/cond to
cbus (needed for #2129), tasks won't be completed on behalf of the
scheduler fiber and hence we will need a back pointer from vy_task to
vy_scheduler.

Needed for #2129

This is a prerequisite for switching scheduler-worker communication from
pthread mutex/cond to cbus, which in turn is needed to generate and send
deferred DELETEs from workers back to tx (#2129).

After this patch, pending tasks will be leaked on shutdown. This is OK,
as we leak a lot of objects on shutdown anyway. The proper way of fixing
this leak would be to rework shutdown without atexit() so that we can
use cbus till the very end.

Needed for #2129

Currently, both vy_read_iterator_next() and vy_point_lookup() add the
returned tuple to the tuple cache. As a result, we store partial tuples
in a secondary index tuple cache although we could store full tuples
(we have to retrieve them anyway when reading a secondary index). This
means wasting memory. Besides, when the #2129 gets implemented, there
will be tuples in a secondary index that have to be skipped as they have
been overwritten in the primary index. Caching them would be inefficient
and error prone. So let's call vy_cache_add() from the upper level and
add only full tuples to the cache.

Closes #3478
Needed for #2129

For the sake of further patches, let's do some refactoring:
 - Rename vy_check_is_unique to vy_check_is_unique_primary and use it
   only for checking the unique constraint of primary indexes. Also,
   make it return immediately if the primary index doesn't need
   uniqueness check, like vy_check_is_unique_secondary does.
 - Open-code uniqueness check in vy_check_is_unique_secondary instead of
   using vy_check_is_unique.
 - Reduce indentation level of vy_check_is_unique_secondary by inverting
   the if statement.

vy_delete_impl helper is only used once in vy_delete and it is rather
small so inlining it definitely won't hurt. On the contrary, it will
consolidate DELETE logic in one place, making the code easier to follow.

There's no point in separating REPLACE path between the cases when
the space has secondary indexes and when it only has the primary
index, because they are quite similar. Let's fold vy_replace_one
and vy_replace_impl into vy_replace to remove code duplication.

Currently, we don't always need a full tuple. Sometimes (e.g. for
checking uniqueness constraint), a partial tuple read from a secondary
index is enough. So we have vy_lsm_get() which reads a partial tuple
from an index. However, once the optimization described in #2129 is
implemented, it might happen that a tuple read from a secondary index
was overwritten or deleted in the primary index, but DELETE statement
hasn't been propagated to the secondary index yet, i.e. we will have to
read the primary index anyway, even if we don't need a full tuple.

That said, let us:

 - Make vy_lsm_get() always fetch a full tuple, even for secondary
   indexes, and rename it to vy_get().

 - Rewrite vy_lsm_full_by_key() as a wrapper around vy_get() and rename
   it to vy_get_by_raw_key().

 - Introduce vy_get_by_secondary_tuple() which gets a full tuple given a
   tuple read from a secondary index. For now, it's basically a call to
   vy_point_lookup(), but it'll become a bit more complex once #2129 is
   implemented.

 - Prepare vy_get() for the fact that a tuple read from a secondary
   index may be absent in the primary index, in which case it should
   try the next matching one.

Needed for #2129

Since vy_point_lookup() now guarantees that it returns the newest
tuple version, we can remove the code that squashes UPSERTs from
vy_squash_process().

Currently, vy_point_lookup(), in contrast to vy_read_iterator, doesn't
rescan the memory level after reading disk, so if the caller doesn't
track the key before calling this function, the caller won't be sent to
a read view in case the key gets updated during yield and hence will
be returned a stale tuple. This is OK now, because we always track the
key before calling vy_point_lookup(), either in the primary or in a
secondary index. However, for #2129 we need it to always return the
latest tuple version, no matter if the key is tracked or not.

The point is in the scope of #2129 we won't write DELETE statements to
secondary indexes corresponding to a tuple replaced in the primary
index. Instead after reading a tuple from a secondary index we will
check whether it matches the tuple corresponding to it in the primary
index: if it is not, it means that the tuple read from the secondary
index was overwritten and should be skipped. E.g. suppose we have the
primary index over the first field and a secondary index over the second
field and the following statements in the space:

  REPLACE{1, 10}
  REPLACE{1, 20}

Then reading {10} from the secondary index will return REPLACE{1, 10}, but
lookup of {1} in the primary index will return REPLACE{1, 20} which
doesn't match REPLACE{1, 10} read from the secondary index hence the
latter was overwritten and should be skipped.

The problem is in the example above we don't want to track key {1} in
the primary index before lookup, because we don't actually read its
value. So for the check to work correctly, we need the point lookup to
guarantee that the returned tuple is always the newest one. It's fairly
easy to do - we just need to rescan the memory level after yielding on
disk if its version changed.

Needed for #2129

The subcommands are used to create binary rock distributions.
In context of #3525

If vy_log_bootstrap() finds a vylog file in the vinyl directory, it
assumes it has to be rebootstrapped and calls vy_log_rebootstrap().
The latter scans the old vylog file to find the max vinyl object id,
from which it will start numbering objects created during rebootstrap to
avoid conflicts with old objects, then it writes VY_LOG_REBOOTSTRAP
record to the old vylog to denote the beginning of a rebootstrap
section. After that initial join proceeds as usual, writing information
about new objects to the old vylog file after VY_LOG_REBOOTSTRAP marker.
Upon successful rebootstrap completion, checkpoint, which is always
called right after bootstrap, rotates the old vylog and marks all
objects created before the VY_LOG_REBOOTSTRAP marker as dropped in the
new vylog. The old objects will be purged by the garbage collector as
usual.

In case rebootstrap fails and checkpoint never happens, local recovery
writes VY_LOG_ABORT_REBOOTSTRAP record to the vylog. This marker
indicates that the rebootstrap attempt failed and all objects created
during rebootstrap should be discarded. They will be purged by the
garbage collector on checkpoint. Thus even if rebootstrap fails, it is
possible to recover the database to the state that existed right before
a failed rebootstrap attempt.

Closes #461

Since we don't create snapshot files for vylog, but instead append
records written after checkpoint to the same file, we have to use the
previous vylog file for backup (see vy_log_backup_path()). So when
recovering from a backup we need to rotate the last vylog to keep vylog
and checkpoint signatures in sync. Currently, we do it on recovery
completion and we use vy_log_create() instead of vy_log_rotate() for it.
This is done so that we can reuse the context that was used for recovery
instead of rereading vylog for rotation. Actually, there's no point in
this micro-optimization, because we rotate vylog only when recovering
from a backup. Let's remove it and use vy_log_rotate() for this.

Needed for #461

Currently only the remote address is printed. Let's also print the UUID,
because replicas are identified by UUID everywhere in tarantool, not by
the address. An example of the output is below:

  I> can't follow eb81a67e-99ee-40bb-8601-99b03fa20124 at [::1]:58083: required {1: 8} available {1: 12}
  C> replica is too old, initiating rebootstrap
  I> bootstrapping replica from eb81a67e-99ee-40bb-8601-99b03fa20124 at [::1]:58083

  I> can't follow eb81a67e-99ee-40bb-8601-99b03fa20124 at [::1]:58083: required {1: 17, 2: 1} available {1: 20}
  I> can't rebootstrap from eb81a67e-99ee-40bb-8601-99b03fa20124 at [::1]:58083: replica has local rows: local {1: 17, 2: 1} remote {1: 23}
  I> recovery start

Suggested by @kostja.

Follow-up ea69a0cd ("replication: rebootstrap instance on startup
if it fell behind").

This function is not used anywhere since commit a1e005d8
("vinyl: write_iterator merges vlsns subsequnces")

Fix 'fio.rmtree' to remove a non empty directories.
And update test.

Closes #3258

Fix 'fio.rmtree' to remove a non empty directories.
And update test.

Closes #3258

Function access_check_ddl checked only for universal access, thus
granting entity or singe object access to a user would have no effect in
scope of this function.
Fix this by adding entity access checks.

Also attaching an existing sequence to a space checked for
create privilege on both space and sequence
(instead of read + write on sequence). Fixed it and changed the tests
accordingly.

Closes #3516