test: update test-run

* Fix *.reject file directory
* Fixed problem with file descriptors when `use_unix_sockets=True`
* Perform the clean up if param `pre_cleanup = True` in suite.ini.
  It cleans checkpoints in workdir for tap tests. And for app tests
  cleans spaces/users/roles/globals/functions and checks count of
  `box.space._cluster`
* Fix replication-py tests by using `cleanup()` without `full=True`

Fixes #1961